Publications

• Comparison of the data-based and gene ontology-based approaches to cluster validation methods for gene microarrays. Bolshakova N., Zamolotskikh A., Cunningham P. 2006. Proceedings of the 19th IEEE Symposium on Computer-Based Medical Systems. P. 539-543.

• Incorporating biological domain knowledge into cluster validity assessment. Bolshakova N., Azuaje F, Cunningham P. 2006.  In: F. Rothlauf et al. (Eds.), The 4th European Workshop on Evolutionary Computation and Machine Learning in Bioinformatics, EvoBIO 2006, Lecture Notes in Computer Science, V. 3907, Springer-Verlag, 2006, P. 13-22.

• Estimating the number of clusters in DNA microarray data. Bolshakova N., Azuaje F. 2006. Methods of Information in Medicine. V. 45. P. 153-157.

• A knowledge-driven approach to cluster validity assessment. Bolshakova N., Azuaje F, Cunningham P. 2005. Bioinformatics .V. 21. P. 42546-2547.

• An integrated tool for microarray data clustering and cluster validity assessment. Bolshakova N., Azuaje F., Cunningham P. 2005. Bioinformatics .V. 21. P. 451-455.

• Validation of clustering techniques for microarray gene-expression. Bolshakova N., Cunningham P. 2005. ERCIM News. N60, P. 35-36.

• cluML: a markup language for clustering and cluster validity assessment of microarray data. Bolshakova N., Cunningham P. 2005. Applied Bioinformatics. V. 4. N3. P. 211-213.

• Estimating the number of clusters in DNA microarray data. Bolshakova N., Azuaje F. 2004. Proceedings of the International Joint Meeting EuroMISE 2004 (IMIA Working Conference on Statistical Methodology in Bioinformatics and Clinical Trials). P. 25.

• An integrated tool for microarray data clustering and cluster validity assessment. Bolshakova N., Azuaje F., Cunningham P. 2004. Proceedings of the 19th ACM Symposium on Applied Computing. P. 133-137.

• Ensemble clustering in medical diagnostics. Greene D., Tsymbal A., Bolshakova N., Cunningham P. 2004. Proceedings of the 17th IEEE Symposium on Computer-Based Medical Systems CBMS'2004, P. 576-581.

• Machaon CVE: cluster validation for gene expression data. Bolshakova N., Azuaje F. 2003. Bioinformatics.V. 19. N18, P.2494-5.

• Cluster validation techniques for genome expression data. Bolshakova N., Azuaje F. 2003. Signal Processing. V. 83. N4, P.825-833.

• Improving expression data mining through cluster validation.  Bolshakova N., Azuaje F. 2003. Proceedings of the 4th Annual IEEE EMBS Special Topic Conference on Information Technology Applications in Biomedicine. P. 19-22.

• Clustering genome expression data: design and evaluation principles. Azuaje F., Bolshakova N. 2002. in: D. Berrar, W. Dubitzky, M. Granzow, ed., A Practical Approach to Microarray Data Analysis, Kluwer Academic Publishers, Boston/Dordrecht/London. P. 230-245.